[gmx-users] SiO2 simulation

[Arden Perkins]

I believe pdb files (protein data bank) are only for peptides, so unless you
are simulating a peptide you will not need any pdb files for your SiO2. Your
structure file (.gro) for SiO2 may be in the fftw library files (or whatever
forcefield you're using). Hope that helps.

Arden Perkins

On Tue, Jan 12, 2010 at 3:23 AM, Batistakis, C. <c.batistakis at tue.nl> wrote:

>  Dear all
>
>
>
> I am a new user of Gromacs. I am interested to simulate amorphous SiO2 and
> I would like to know if someone can send me the .pdb and .top files.
>
>
>
> Thanks in advance
>
>
>
> Chrysostomos
>
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