[gmx-users] solvent except water

[rasoul nasiri]

Hi

I want to use a solvent with two types molecules (for example linear and
cyclic Glucose form).
How can I fill box with them?

I highly appreciate for advice given me!

Best Regards
Rasoul

On Sat, Jan 16, 2010 at 11:42 AM, David van der Spoel
<spoel at xray.bmc.uu.se>wrote:

> leila karami wrote:
>
>> Dear David
>>  in genbox command system solvated by water molecule by default. but I
>> want solvent except water.
>>   leila karami
>>
>>  OK, now I understand.
>
> You can give to genbox any solvent that you like, provided that each
> molecule consists of a single residue (the residue number is used to
> distinguish molecules).  In the gromacs distribution there are a couple of
> other solvents present. Look in share/gromacs/top directory of your
> installation (or roll your own).
>
> --
> David van der Spoel, Ph.D., Professor of Biology
> Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
> Box 596, 75124 Uppsala, Sweden. Phone:  +46184714205. Fax: +4618511755.
> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://folding.bmc.uu.se
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the www interface
> or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100116/12758e51/attachment.html>