[gmx-users] dynamic cross correlation map (DCCM)

leila karami karami.leila1 at gmail.com
Sun Jan 17 13:22:56 CET 2010


I want to obtain dynamic cross correlation map (DCCM). I used following
command for obtaining covariance matrix.

g_covar -f traj.xtc -s topol.tpr -o eigenval.xvg -v eigenvec.trr -l
covar.log -xpm covar.xpm.

my system consists protein of 70 aminoacids. I want survey correlated and
anti-correlated motion between residues.

Is my manner true? If so, which of output files in above give me dynamic
cross correlation map (DCCM)? otherwise, please guide me.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100117/9dfa4351/attachment.html>

More information about the gromacs.org_gmx-users mailing list