[gmx-users] Genbox error message

[Mark Abraham]

On 28/01/10 13:06, Lum Nforbi wrote:
> Hello all,
>
> Can someone tell me the meaning of this error message after using the
> genbox command?

Certainly not without more useful information - GROMACS version, 
simulation system size, actual command line. Even then, the best guess 
is probably that you're running genbox on a machine for which it wasn't 
compiled, or for which some shared libraries have been updated in an 
incompatible way. Try recompiling GROMACS if so.

Mark

> *** glibc detected *** genbox: munmap_chunk(): invalid pointer:
> 0x095969c8 ***
> ======= Backtrace: =========
> /lib/tls/i686/cmov/libc.so.6[0xb7e7c454]
> genbox[0x81195c4]
> ======= Memory map: ========
> 08048000-082be000 r-xp 00000000 08:01 4333977
> /usr/local/gromacs/bin/genbox
> 082be000-082bf000 r-xp 00275000 08:01 4333977
> /usr/local/gromacs/bin/genbox
> 082bf000-082c5000 rwxp 00276000 08:01 4333977
> /usr/local/gromacs/bin/genbox
> 082c5000-082cb000 rwxp 082c5000 00:00 0
> 0958f000-099e9000 rwxp 0958f000 00:00 0          [heap]
> b7df3000-b7df4000 rwxp b7df3000 00:00 0
> b7df4000-b7e09000 r-xp 00000000 08:01 3860700
> /lib/tls/i686/cmov/libpthread-2.8.90.so <http://libpthread-2.8.90.so>
> b7e09000-b7e0a000 r-xp 00014000 08:01 3860700
> /lib/tls/i686/cmov/libpthread-2.8.90.so <http://libpthread-2.8.90.so>
> b7e0a000-b7e0b000 rwxp 00015000 08:01 3860700
> /lib/tls/i686/cmov/libpthread-2.8.90.so <http://libpthread-2.8.90.so>
> Aborted
>
> I appreciate your help.
>
> Lum
>