[gmx-users] error: Cannot compile and link MPI code with mpicc

[Chandan Choudhury]

I am using openmpi-1.4.1.


--
Chandan kumar Choudhury
NCL, Pune
INDIA


On Sun, Jan 31, 2010 at 12:34 AM, Chandan Choudhury <iitdckc at gmail.com>wrote:

> Hi Ronald !!
> Thanks for your reply.
> I recompiled the openmpi. But while executing ./configure --enable-mpi in
> gromacs4.0.7 the following error is shown in config.log file.
>
>
> configure:4536: checking for mpicc
> configure:4552: found /usr/lib/mpi/gcc/openmpi/bin/mpicc
> configure:4563: result: mpicc
> configure:4577: checking whether the MPI cc command works
> configure:4601: mpicc -o conftest -g -O2   conftest.c  >&5
> conftest.c:15:17: error: mpi.h: No such file or directory
>
> configure:4607: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "gromacs"
> | #define PACKAGE_TARNAME "gromacs"
> | #define PACKAGE_VERSION "4.0.7"
> | #define PACKAGE_STRING "gromacs 4.0.7"
> | #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
> | #define PACKAGE "gromacs"
> | #define VERSION "4.0.7"
> | #define GMX_SOFTWARE_SQRT
> | #define GMX_QMMM_GAUSSIAN
> | #define BUILD_TIME "Mon Feb  1 14:07:34 EST 2010"
> | #define BUILD_USER "root at corsica"
>
> | #define BUILD_MACHINE "Linux 2.6.31.5-0.1-desktop i686"
> | /* end confdefs.h.  */
> | #include <mpi.h>
> | int
> | main ()
> | {
> | int argc; char **argv; MPI_Init(&argc,&argv);
> |   ;
> |   return 0;
> | }
> configure:4619: error: Cannot compile and link MPI code with mpicc
>
>
> --
> Chandan kumar Choudhury
> NCL, Pune
> INDIA
>
>
> On Sat, Jan 30, 2010 at 10:57 PM, Roland Schulz <roland at utk.edu> wrote:
>
>> Hi,
>>
>> your MPI installation has to be brogen. mpicc always has to be able to
>> find libmpi. Please reinstall mpi correctly.
>>
>> Roland
>>
>> On Sat, Jan 30, 2010 at 11:06 AM, Chandan Choudhury <iitdckc at gmail.com>wrote:
>>
>>> Hi gmx users !!
>>>
>>> On compiling GMX paralley, following error was encountered. How can I
>>> tackle this.
>>> Kindly help.
>>>
>>>
>>> checking for mpicc... mpicc
>>> checking whether the MPI cc command works... configure: error: Cannot
>>> compile and link MPI code with mpicc
>>>
>>> The config.log file reads
>>>
>>> configure:4536: checking for mpicc
>>> configure:4552: found /usr/lib/mpi/gcc/openmpi/bin/mpicc
>>> configure:4563: result: mpicc
>>> configure:4577: checking whether the MPI cc command works
>>> configure:4601: mpicc -o conftest -g -O2 -I/usr/local/openmpi/include/
>>> conftest.c  >&5
>>> /usr/lib/gcc/i586-suse-linux/4.4/../../../../i586-suse-linux/bin/ld:
>>> cannot find -lmpi
>>> collect2: ld returned 1 exit status
>>> configure:4607: $? = 1
>>> configure: failed program was:
>>> | /* confdefs.h.  */
>>> | #define PACKAGE_NAME "gromacs"
>>> | #define PACKAGE_TARNAME "gromacs"
>>>  #define PACKAGE_VERSION "4.0.7"
>>> | #define PACKAGE_STRING "gromacs 4.0.7"
>>> | #define PACKAGE_BUGREPORT "gmx-users at gromacs.org"
>>> | #define PACKAGE "gromacs"
>>> | #define VERSION "4.0.7"
>>> | #define GMX_SOFTWARE_SQRT
>>> | #define GMX_QMMM_GAUSSIAN
>>> | #define BUILD_TIME "Sat Jan 30 21:42:50 IST 2010"
>>> | #define BUILD_USER "root at shiraz"
>>> | #define BUILD_MACHINE "Linux 2.6.31.5-0.1-desktop i686"
>>> | /* end confdefs.h.  */
>>> | #include <mpi.h>
>>> | int
>>> | main ()
>>> | {
>>> | int argc; char **argv; MPI_Init(&argc,&argv);
>>> |   ;
>>> |   return 0;
>>> | }
>>> configure:4619: error: Cannot compile and link MPI code with mpicc
>>>
>>>
>>> Chandan
>>>
>>> --
>>> Chandan kumar Choudhury
>>> NCL, Pune
>>> INDIA
>>>
>>> --
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>>
>>
>>
>> --
>> ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
>> 865-241-1537, ORNL PO BOX 2008 MS6309
>>
>> --
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>
>
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