[gmx-users] pdb2gmx with DNA
patargias at usf.edu
Sat Jul 10 01:51:17 CEST 2010
Thanks for your reply Justin.
I am trying to generate a topology dor a dna structure using the charmm dna.rtp
I have renamed the residue name to DA , DG etc. I have also set DA5 and DC3 for
the 5' and 3' ends
I got this error
atom N not found in buiding block 2DG while combining tdb and rtp
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
I quess I need to change something in the .rtp and/or the .tdb files. But what?
Thanks a lot
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