[gmx-users] Removing water from a trajectory

shayamra at post.tau.ac.il shayamra at post.tau.ac.il
Wed Jul 14 09:00:57 CEST 2010

You should include
at the end of you trjconv command-line. This tells trjconv to show  
options from index.ndx.


Quoting "Anirban Ghosh" <reach.anirban.ghosh at gmail.com>:

> Hi ALL,
> I have a system consisting of protein+lipid+ligand+water which has been
> simulated for 10 ns. Now I want to make a compressed trajectory from the
> original one by keeping only the protein and the ligand. I am trying to do
> so by using trjconv with an index file. But every time trjconv is showing
> the default options and I am not able to select the protein and the ligand
> simultaneously to generate the output. How can I do this? Any suggestion is
> welcome.
> Thanks a lot in advance.
> Regards,
> Anirban

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