Subject: [gmx-users] to visualise protein conformation after every 1ns

[Cun Zhang]

You can use the command trjconv to obtain them.

trjconv -s md -f md -dt 1000 -o out.pdb


For more information, please see the help of trjconv.

Zhang Cun

> Message: 7
> Date: Fri, 16 Jul 2010 12:32:36 +0530 (IST)
> From: sonali dhindwal <sonali11dhindwal at yahoo.co.in>
> Subject: [gmx-users] to visualise protein conformation after every 1ns
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> Message-ID: <707407.78411.qm at web94615.mail.in2.yahoo.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hello All,
> Sorry for a dumb question,,but I have a query that I want to run a 5 ns simulation on one of the protein and I want to see protein's conformation after every 1 ns,i.e to have a pdb file, so how should I proceed or changes should I make in mdp file.
> Thanks
>
> --
> Sonali Dhindwal
>
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