[gmx-users] g_sas for martini coarse-grained particles
x.periole at rug.nl
Sun Jul 18 11:56:58 CEST 2010
also an example of the use of SASA is in JACS-2007, 129, 10126-10132
On Jul 18, 2010, at 1:59 AM, Sanku M wrote:
> I am trying to estimate the solvent accessible surface area of
> hydrophobic tails of a martini DPPC lipid bilayer . I was going to
> use g_sas for that. But, I observe that this tool gets the vanderwal
> radii from vdwradii.dat file. But, since the particles in the
> martini lipids are united-atom types, I was wondering what will be a
> reasonable radius to use for hydrophobic tail particles of a martini
> lipid ?
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