[gmx-users] gromacs-localp-3.0.2 local pressure installation

kambiz yaghmaei kambizyaghmaei at yahoo.com
Mon Jul 19 04:50:58 CEST 2010


Hi all
  
I tried to install "gromacs-localp-3.0.2" on Fedora 11. 
First, I successfully run ./configure: 
  
………………………………………………………………………………………….. 
………………………………………………………………………………………….. 
config.status: creating man/Makefile 
config.status: creating man/man1/Makefile 
config.status: creating src/config.h 
  
GROMACS / LOCALPRESSURE is ready to compile. 
  
* Binaries and libraries for this host will be installed in 
    /usr/local/gromacs-localp/i686-pc-linux-gnu/bin 
    /usr/local/gromacs-localp/i686-pc-linux-gnu/lib 
  and shared data will placed in 
    /usr/local/gromacs-localp/share 
  (You can set this with --prefix, --exec-prefix and --datadir) 
  
* You are compiling a double precision version of the package - 
  program names will be suffixed with _d to avoid overwriting single 
  precision files. You can override it with --program-suffix 
  
  
  
But after making make-distclean followed by make command, 
I am facing this error message: 
  
  
………………………………………………………………………………………………………. 
……………………………………………………………………………………………………… 
cc -DHAVE_CONFIG_H -I. -I. -I../../src  -I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\"   -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -o mkinl mkinl.o mkinl_declarations.o mkinl_outerloop.o mkinl_innerloop.o mkinl_calcdist.o mkinl_invsqrt.o mkinl_recip.o mkinl_interactions.o metacode.o 
./mkinl c 
>>> This is the GROMACS innerloop code generator 
>>> It will generate double precision C code in file innerc.c 
>>> Using gromacs invsqrt code 
>>> Inlining gromacs invsqrt and/or reciprocal code 
>>> Using normal solvent optimized loops 
>>> Prefetching coordinates in loops: none 
>>> Prefetching forces in loops: none 
>>> Nonthreaded inner loops 
>>> Vectorizing invsqrt in loops:none 
  
Progress:  1% 
Progress:  2% 
Progress:  3% 
Progress:  5% 
Progress:  6% 
Progress:  7% 
Progress:  8% 
Progress: 10% 
Progress: 11% 
Progress: 12% 
Progress: 14% 
Progress: 15% 
Progress: 16% 
Progress: 17% 
Progress: 19% 
Progress: 20% 
Progress: 21% 
Progress: 23% 
Progress: 24% 
Progress: 25% 
Progress: 26% 
Progress: 28% 
Progress: 29% 
Progress: 30% 
Progress: 32% 
Progress: 33% 
Progress: 34% 
Progress: 35% 
Progress: 37% 
Progress: 38% 
Progress: 39% 
Progress: 41% 
Progress: 42% 
Progress: 43% 
Progress: 44% 
Progress: 46% 
Progress: 47% 
Progress: 48% 
Progress: 50% 
Progress: 51% 
Progress: 52% 
Progress: 53% 
Progress: 55% 
Progress: 56% 
Progress: 57% 
Progress: 58% 
Progress: 60% 
Progress: 61% 
Progress: 62% 
Progress: 64% 
Progress: 65% 
Progress: 66% 
Progress: 67% 
Progress: 69% 
Progress: 70% 
Progress: 71% 
Progress: 73% 
Progress: 74% 
Progress: 75% 
Progress: 76% 
Progress: 78% 
Progress: 79% 
Progress: 80% 
Progress: 82% 
Progress: 83% 
Progress: 84% 
Progress: 85% 
Progress: 87% 
Progress: 88% 
Progress: 89% 
Progress: 91% 
Progress: 92% 
Progress: 93% 
Progress: 94% 
Progress: 96% 
Progress: 97% 
Progress: 98% 
Progress: 100% 
>>> Generated 29303 lines of code in 78 functions 
(innerc.c may take a while to compile) 
  
source='innerc.c' object='innerc.lo' libtool=yes \ 
     depfile='.deps/innerc.Plo' tmpdepfile='.deps/innerc.TPlo' \ 
     depmode=gcc3 /bin/sh ../../config/depcomp \ 
     /bin/sh ../../libtool --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I../../src  -I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\"   -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o innerc.lo `test -f innerc.c || echo './'`innerc.c 
cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\" -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c innerc.c -MT innerc.lo -MD -MP -MF .deps/innerc.TPlo -o innerc.o 
In file included from ../../include/typedefs.h:53, 
                 from innerc.c:8: 
../../include/sysstuff.h:46:2: warning: #ident is a deprecated GCC extension 
In file included from ../../include/types/graph.h:40, 
                 from ../../include/typedefs.h:66, 
                 from innerc.c:8: 
../../include/fatal.h:46:2: warning: #ident is a deprecated GCC extension 
In file included from ../../include/vec.h:100, 
                 from innerc.c:10: 
../../include/maths.h:46:2: warning: #ident is a deprecated GCC extension 
In file included from ../../include/vec.h:103, 
                 from innerc.c:10: 
../../include/macros.h:46:2: warning: #ident is a deprecated GCC extension 
innerc.c:25018:7: error: invalid suffix "a" on integer constant 
innerc.c: In function 'inl3302': 
innerc.c:25018: error: expected ';' before ')' token 
innerc.c:25018: error: expected statement before ')' token 
innerc.c:25018: error: expected expression before '=' token 
innerc.c:27591:7: error: invalid suffix "a" on integer constant 
innerc.c: In function 'inl3402': 
innerc.c:27591: error: expected ';' before ')' token 
innerc.c:27591: error: expected statement before ')' token 
innerc.c:27591: error: expected expression before '=' token 
make[3]: *** [innerc.lo] Error 1 
make[3]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src/gmxlib' 
make[2]: *** [all-recursive] Error 1 
make[2]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src' 
make[1]: *** [all] Error 2 
make[1]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src' 
make: *** [all-recursive] Error 1 
  
  
Could anybody help me ?? 
Kambiz 



      
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100718/f13d9be1/attachment.html>


More information about the gromacs.org_gmx-users mailing list