[gmx-users] gromacs-localp-3.0.2 local pressure installation
kambiz yaghmaei
kambizyaghmaei at yahoo.com
Mon Jul 19 04:50:58 CEST 2010
Hi all
I tried to install "gromacs-localp-3.0.2" on Fedora 11.
First, I successfully run ./configure:
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config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating src/config.h
GROMACS / LOCALPRESSURE is ready to compile.
* Binaries and libraries for this host will be installed in
/usr/local/gromacs-localp/i686-pc-linux-gnu/bin
/usr/local/gromacs-localp/i686-pc-linux-gnu/lib
and shared data will placed in
/usr/local/gromacs-localp/share
(You can set this with --prefix, --exec-prefix and --datadir)
* You are compiling a double precision version of the package -
program names will be suffixed with _d to avoid overwriting single
precision files. You can override it with --program-suffix
But after making make-distclean followed by make command,
I am facing this error message:
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cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\" -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -o mkinl mkinl.o mkinl_declarations.o mkinl_outerloop.o mkinl_innerloop.o mkinl_calcdist.o mkinl_invsqrt.o mkinl_recip.o mkinl_interactions.o metacode.o
./mkinl c
>>> This is the GROMACS innerloop code generator
>>> It will generate double precision C code in file innerc.c
>>> Using gromacs invsqrt code
>>> Inlining gromacs invsqrt and/or reciprocal code
>>> Using normal solvent optimized loops
>>> Prefetching coordinates in loops: none
>>> Prefetching forces in loops: none
>>> Nonthreaded inner loops
>>> Vectorizing invsqrt in loops:none
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>>> Generated 29303 lines of code in 78 functions
(innerc.c may take a while to compile)
source='innerc.c' object='innerc.lo' libtool=yes \
depfile='.deps/innerc.Plo' tmpdepfile='.deps/innerc.TPlo' \
depmode=gcc3 /bin/sh ../../config/depcomp \
/bin/sh ../../libtool --mode=compile cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\" -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c -o innerc.lo `test -f innerc.c || echo './'`innerc.c
cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include -DGMXLIBDIR=\"/usr/local/gromacs-localp/share/top\" -O6 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops -c innerc.c -MT innerc.lo -MD -MP -MF .deps/innerc.TPlo -o innerc.o
In file included from ../../include/typedefs.h:53,
from innerc.c:8:
../../include/sysstuff.h:46:2: warning: #ident is a deprecated GCC extension
In file included from ../../include/types/graph.h:40,
from ../../include/typedefs.h:66,
from innerc.c:8:
../../include/fatal.h:46:2: warning: #ident is a deprecated GCC extension
In file included from ../../include/vec.h:100,
from innerc.c:10:
../../include/maths.h:46:2: warning: #ident is a deprecated GCC extension
In file included from ../../include/vec.h:103,
from innerc.c:10:
../../include/macros.h:46:2: warning: #ident is a deprecated GCC extension
innerc.c:25018:7: error: invalid suffix "a" on integer constant
innerc.c: In function 'inl3302':
innerc.c:25018: error: expected ';' before ')' token
innerc.c:25018: error: expected statement before ')' token
innerc.c:25018: error: expected expression before '=' token
innerc.c:27591:7: error: invalid suffix "a" on integer constant
innerc.c: In function 'inl3402':
innerc.c:27591: error: expected ';' before ')' token
innerc.c:27591: error: expected statement before ')' token
innerc.c:27591: error: expected expression before '=' token
make[3]: *** [innerc.lo] Error 1
make[3]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src/gmxlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/Yaghmaei/gromacs-localp-3.0.2/src'
make: *** [all-recursive] Error 1
Could anybody help me ??
Kambiz
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