[gmx-users] periodicity and correct output

[Vitaly Chaban]

Hi,

Is there an option in any gromacs utility to apply periodicity to the
output configuration or trajectory? I want to get all the coordinates
just within an elementary box, between 0 and LBOX in spite of any
details of the system.

For example, "editconf -no(pbc)" does not do its work since after
processing negative coordinates are sometimes present as well as those
bigger than LBOX.

Vitaly

Dr. Vitaly Chaban