[gmx-users] decomposition

[Carsten Kutzner]

Hi Jacopo,

from somewhere the information about the 7 nodes must have come.
What are the exact commands you used? What MPI are you using?

Carsten


On Jul 26, 2010, at 12:35 PM, Jacopo Sgrignani wrote:

> Dear all
> i'm trying to run a MD simulation using domain decomposition but after two
> days i'm only able to get this error:
> 
> 
> There is no domain decomposition for 7 nodes that is compatible with the
> given box and a minimum cell size of 2.37175 nm
> Change the number of nodes or mdrun option -rcon or -dds or your LINCS
> settings
> Look in the log file for details on the domain decomposition
> 
> 
> I don't select a number of nodes but i use the default options, but the
> simulation does not run.
> So could you give me advices to run with domain decomp, or  where can I
> find exaples about this?
> 
> Thanks a lot
> 
> Jacopo
> 
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php