[gmx-users] Coarse-Grain: GROMACS bond information to VMD

[Justin A. Lemkul]

C. Batistakis wrote:
> Dear all
> 
> I am trying to visuallize a coarse-grained model  I have created (long 
> bond length!) with VMD. I saw the script coarse_grain.tcl 
> <http://www.gromacs.org/@api/deki/files/89/=coarse_grain.tcl> but after 
> many hours of trying I couldn't use it (I am a new user in VMD and I 
> don't know how to source the script in VMD).
> 

Open the Tk console and "source coarse_grain.tcl"

> Can anybody give some more "for dummies" instructions?
> 

There is also a simple Perl script here:

http://www.gromacs.org/Developer_Zone/Programming_Guide/VMD

-Justin

> Thanks a lot!
> 
> Chrysostomos
> 
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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