[gmx-users] Coarse-Grain: GROMACS bond information to VMD

Justin A. Lemkul jalemkul at vt.edu
Tue Jul 27 21:33:09 CEST 2010

C. Batistakis wrote:
> Dear all
> I am trying to visuallize a coarse-grained model  I have created (long 
> bond length!) with VMD. I saw the script coarse_grain.tcl 
> <http://www.gromacs.org/@api/deki/files/89/=coarse_grain.tcl> but after 
> many hours of trying I couldn't use it (I am a new user in VMD and I 
> don't know how to source the script in VMD).

Open the Tk console and "source coarse_grain.tcl"

> Can anybody give some more "for dummies" instructions?

There is also a simple Perl script here:



> Thanks a lot!
> Chrysostomos


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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