[gmx-users] (no subject)

[Anitha]

my header starts as

# g_sas is part of G R O M A C S:
#
# GROtesk MACabre and Sinister
#
@    title "Area per residue"
@    xaxis  label "Residue"
@    yaxis  label "Area (nm\S2\N)"
@TYPE xy
         1    0.846565   0.312334
         2       0.598   0.189911
         3    0.837035   0.363443
         4     1.14936   0.304359
         5    0.630063   0.233607
         6    0.625571   0.321569
         7    0.261401   0.240533
         8   0.0940011  0.0872611


i`m not able to understand what the second and third column represents....



On Fri, Jul 30, 2010 at 4:33 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> Anitha wrote:
>
>> In the headers file also i didn`t get the answer about those lines....
>>
>>
> Well, what do they say?
>
> -Justin
>
>  On Fri, Jul 30, 2010 at 4:01 PM, Justin A. Lemkul <jalemkul at vt.edu<mailto:
>> jalemkul at vt.edu>> wrote:
>>
>>
>>
>>    Anitha wrote:
>>
>>        I executed the following command.
>>
>>        g_sas -s topol.tpr -f traj.xtc -or resarea.xvg -o area.xvg
>>        xmgrace -nxy resarea.xvg
>>
>>
>>        I have chosen the protein group for surface calculation and output.
>>        I get two sets of values: one is bigger (black) than the other
>>        (red).
>>
>>        I have checked the manual and other sources, but I could not find
>> an
>>        answer about the black and red line.  What does red and black
>>        line shows?
>>
>>
>>    Read the headers of the .xvg file.
>>
>>    -Justin
>>
>>
>>        --         S.Anitha
>>
>>
>>    --     ========================================
>>
>>    Justin A. Lemkul
>>    Ph.D. Candidate
>>    ICTAS Doctoral Scholar
>>    MILES-IGERT Trainee
>>    Department of Biochemistry
>>    Virginia Tech
>>    Blacksburg, VA
>>    jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
>>
>>    http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>>
>>    ========================================
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>>
>>
>> --
>> S.Anitha
>>
>>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
> --
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-- 
S.Anitha
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