[gmx-users] hydrogen bonds

[Vasilis Georgilas]

Hello everyone,

in the NPT simulation I run I have 2 layers of water and palmitic acid in
between.
How i should make my index file to see the different kinds of hydrogen
bonds?

ps
there will be water - water , O= ..... O= between PLM, O= ...... OH between
PLM and water and OH .... OH between water and PLM hydrogen bonds


thanks in advance

Regards,

Vasilis
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