[gmx-users] Another install error: gmx-4.5 beta1

Justin A. Lemkul jalemkul at vt.edu
Fri Jul 30 23:53:59 CEST 2010


I'm trying to install the newest beta on our university's supercomputer, but I'm 
encountering an error during compilation.  It's an aging system, so this might 
be somewhat difficult to solve.  Here are the specs:

Mac OSX 10.3
2.3 GHz PowerPC 970FX processors
gcc 3.3
fftw 3.0.1

Configuration went without a hitch, with config.log indicating all necessary 
headers, libraries, etc. were found.

./configure --prefix=/home/rdiv1001/gromacs-4.5_beta1 
LDFLAGS="-L/home/rdiv1001/fftw-3.0.1/lib" --program-suffix=_4.5_beta1 

Compilation fails with the following:

Making all in selection
/bin/sh ../../../libtool --tag=CC   --mode=compile cc -DHAVE_CONFIG_H -I. 
-I../../../src -I/usr/include/libxml2 -I../../../include 
-I/home/rdiv1001/fftw-3.0.1/include  -O3 -fomit-frame-pointer -finline-functions 
-Wall -Wno-unused -faltivec -funroll-all-loops -std=gnu99 -mcpu=7450 -mtune=970 
-MT sm_keywords.lo -MD -MP -MF .deps/sm_keywords.Tpo -c -o sm_keywords.lo 
  cc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/include/libxml2 
-I../../../include -I/home/rdiv1001/fftw-3.0.1/include -O3 -fomit-frame-pointer 
-finline-functions -Wall -Wno-unused -faltivec -funroll-all-loops -std=gnu99 
-mcpu=7450 -mtune=970 -MT sm_keywords.lo -MD -MP -MF .deps/sm_keywords.Tpo -c 
sm_keywords.c -o sm_keywords.o
In file included from sm_keywords.c:41:
/usr/include/regex.h:68: error: parse error before "regoff_t"
/usr/include/regex.h:78: error: parse error before "regoff_t"
/usr/include/regex.h:124: error: parse error before "regmatch_t"
make[4]: *** [sm_keywords.lo] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1

Any ideas for a fix?



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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