[gmx-users] Is there a way to energy minimize only part of macromolecular structure?

[Arthur Roberts]

Hi, all,

Is there a way to energy minimize only part of the structure?  I have  
made the ndx file, but I am not sure what parameters to use with  
mdrun.  Your help is much appreciated.

Art

Dr. Arthur Roberts, Ph.D.
University of California, San Diego
Skaggs School of Pharmacy and Pharmaceutical Sciences
9500 Gilman Drive #0703
La Jolla, CA 92093-0703

email: aroberts99163 at yahoo.com
cell: 206-850-7468
skype=aroberts92122