[gmx-users] helical parameters for DNA

shahab shariati shahab.shariati at gmail.com
Tue Jun 8 12:05:17 CEST 2010

 Hi gromacs users

I want to simulate pr-dna by gromacs.I read a article (Biophysical Journal
87(6) 3799–3813) inwhich helical parameters for DNA (rise, slide, twist,
roll, tilt, shift) calculated by md simulation, but I did not understand two

How and what command these parameters were calculated?

I read gromacs manual. in that there is only  g helix  and  g helixorient
for Protein specific analysis.

can any body help me how to do this ?
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100608/125fddf0/attachment.html>

More information about the gromacs.org_gmx-users mailing list