[gmx-users] g_rmsf -res

Carla Jamous carlajamous at gmail.com
Thu Jun 10 12:03:30 CEST 2010

Hi Everyone,

please I have a question concerning g_rmsf.
I need to compare the RMSF from my initial structure to the RMSF of my
average structure.

To do so, I need to calculate the average per residue.

When I did

g_rmsf -s .tpr -f .xtc -n .ndx -b xx -e yy -o rmsf


g_rmsf -s .tpr -f .xtc -n .ndx -b xx -e yy  -res -o rmsf

I got the same result, when choosing C-alpha for root mean square

So please can anyone explain how can I get the average per residue over a
period of time?

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20100610/d9aa054d/attachment.html>

More information about the gromacs.org_gmx-users mailing list