[gmx-users] soft-core
fancy2012
fancy2012 at yeah.net
Sun Jun 13 13:14:24 CEST 2010
Dear GMX users,
when I generate the input file of MD simulation using grompp, I get this error: ERROR: The soft-core power is 0 and can only be 1 or 2. I don't know how to figure it out? Could somebody give me a hand? Thanks very much in advance!
Here is the mdp file:
cpp = /lib/cpp
constraints = all-bonds
integrator = md
tinit = 0.0
dt = 0.002
nsteps = 25000
nstcomm = 1
nstxout = 10000
nstvout = 0
nstfout = 0
nstlog = 500
nstenergy = 250
nstxtcout = 1000
xtc_precision = 1000
xtc_grps = Protein
nstlist = 5
energygrps = Protein SOL
ns_type = grid
rlist = 0.9
coulombtype = Reaction-Field
epsilon_r = 78.0
rcoulomb = 1.4
rvdw = 1.4
Tcoupl = Berendsen
tc-grps = Protein SOL
ref_t = 300 300
tau_t = 0.1 0.1
Pcoupl = Berendsen
tau_p = 1.0
compressibility = 4.6e-5
ref_p = 1.0
free_energy = yes
init_lambda = 0.00
sc-alpha = 1.51
All the best,
fancy
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