[gmx-users] Re: trjconv index file

[Justin A. Lemkul]

I assume you meant to send this to the list, so I will CC the message there.

Rabab Toubar wrote:
> Hi
> 
> Trying to extract the protein from the md run without waters, all the mailing lists suggests using an index file before running trjconv, but I get file input/output error
> Can someone give me more details on how to egt the index file
> 

You do not need an index file to extract a default group (i.e., Protein).  See here:

http://www.gromacs.org/Documentation/Terminology/Default_Index_Groups

-Justin

> Thanks
> Rabab
> 
> 
>       
> 
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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