[gmx-users] Re: trjconv index file

Justin A. Lemkul jalemkul at vt.edu
Tue Jun 15 17:42:49 CEST 2010

I assume you meant to send this to the list, so I will CC the message there.

Rabab Toubar wrote:
> Hi
> Trying to extract the protein from the md run without waters, all the mailing lists suggests using an index file before running trjconv, but I get file input/output error
> Can someone give me more details on how to egt the index file

You do not need an index file to extract a default group (i.e., Protein).  See here:



> Thanks
> Rabab


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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