[gmx-users] Problem of reading the atom'force from trr file using template.c
聂雪川
niexuechuan at 163.com
Wed Jun 23 10:13:31 CEST 2010
Dear all,
I am trying to analysis the force of a atom.So I change "fr.x[n][XX]" to "fr.f[n][XX]" in the template.c .But it turns up "Segmentation fault" .(The pointer "fr.f" is NULL) How could I get the force?
My mdp file:
title = Yo
cpp = /usr/bin/cpp
constraints = all-bonds
integrator = md
dt = 0.002 ; ps !
nsteps = 2500000 ; total 5ns.
comm_mode = NonE
nstcomm =
nstxout = 50
nstvout = 0
nstfout = 50
nstxtcout = 0
nstlog = 5000
nstenergy = 5000
nstlist = 10
ns_type = grid
coulombtype =PME
rlist = 1.4
rcoulomb = 1.4
rvdw = 1.4
pbc = xyz
; Berendsen temperature coupling is on in two groups
Tcoupl = berendsen
tc-grps = CNT SOL
tau_t = 0.1 0.1
ref_t = 300 300
; Energy monitoring
energygrps = CNT SOL
; Non-equilibrium MD
freezegrps = CNP
freezedim = Y Y Y
; Isotropic pressure coupling is now on
Pcoupl = no
;Pcoupltype = isotropic
;tau_p = 0.5
;compressibility = 4.5e-5
;ref_p = 1.0
; Generate velocites is off at 300 K.
gen_vel = no
gen_temp = 300.0
gen_seed = 537129
Many thanks in advance,
Chuan
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