[gmx-users] CL atom not being recognised

jayant james jayant.james at gmail.com
Tue Jun 29 00:14:20 CEST 2010

The protein I am attempting to simulate has a CL atom. When I run pdb2gmx I
get the following error message. Any help in overcoming this problem would
be appreciated.
Program pdb2gmx, VERSION 4.0
Source code file: pdb2gmx.c, line: 429

Fatal error:
Atom CL- in residue CL- 574 not found in rtp entry with 1 atoms
             while sorting atoms

Jayasundar Jayant James

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