[gmx-users] g_msd and diffusion coefficent

[Mark Abraham]

----- Original Message -----
From: leila karami <karami.leila1 at gmail.com>
Date: Tuesday, June 29, 2010 16:41
Subject: [gmx-users] g_msd and diffusion coefficent
To: gmx-users at gromacs.org

> Hi gromacs users >   > in my system, there are pr, dna, water and Na and I want to obtain diffusion of  pr in dna but when I use g_msd command, gromacs says select only 1 group. should be this group pr or dna?

What's pr?

If you mean protein, does it make sense to find the diffusion coefficient of a protein within DNA? What does it make sense to find a diffusion coefficient in?

Mark

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