[gmx-users] Re: Preserving chain id/information when using editconf (gromacs 4.0.7)

Shay Teaching shay.teaching at gmail.com
Mon Nov 1 12:10:22 CET 2010


Sorry - problem resolved :-)

On Mon, Nov 1, 2010 at 12:55 PM, Shay Teaching <shay.teaching at gmail.com>wrote:

> Hi everyone,
>
> I've come across some problem: I am simulating a protein that is composed
> of several chains. My original pdb file includes information about chains
> but every time I use editconf my chain information vanishes. the only other
> option I have is using -label which gives bogus results.
>
> Is there anyway to have editconf preserve the chain information it finds in
> the original file?
>
> Much obliged,
> -Shay
>
> --
> --------------------------------------------------------
> Shay Amram,
> M.Sc. Dep. of Biochemistry,
> Faculty of Life Sciences,
> Tel Aviv University,
> www.tau.ac.il/~shayamra <http://www.tau.ac.il/%7Eshayamra>
> --------------------------------------------------------
>
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