[gmx-users] problem in executing genbox command

[Mark Abraham]

On 6/11/2010 4:02 PM, bharat gupta wrote:
> Hi all ,
>
> Whenever i am running the genbox command I am getting the following 
> error  :-
>
>
> genbox -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top
>
>                          :-)  G  R  O  M  A  C  S  (-:
>
> Segmentation fault (core dumped)

The most likely scenario is some shared library is not available when it 
should be. That means the environment in which you ran the above command 
is different from the one in which GROMACS was built. That means 
most/all GROMACS commands will fail. A possibility is that there's a bug 
in GROMACS, but I doubt it. Do other GROMACS commands, or other genbox 
runs work?

Mark

>
> Can anybody tell me whats the reason for such an error ...
>
> -- 
> Bharat
> Ph.D. Candidate
> Room No. : 7202A, 2nd Floor
> Biomolecular Engineering Laboratory
> Division of Chemical Engineering and Polymer Science
> Pusan National University
> Busan -609735
> South Korea
> Lab phone no. - +82-51-510-3680, +82-51-583-8343
> Mobile no. - 010-5818-3680
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>

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