[gmx-users] Re: trjconv

Justin A. Lemkul jalemkul at vt.edu
Sun Nov 7 18:45:33 CET 2010

Vitaly Chaban wrote:
> Did you try to re-run your trajectory? Does the problem persist then?

Perhaps the faster solution would be to see what gmxcheck says about the trajectory.


>> I have a trajectory with 20000 frames.
>> i want to separate just 1000 last frames of it in pdb formt and 1000 first
>> frames too.
>> I entered this command:
>> trjconv  -f  mmm.trr  -o nnn.pdb -s  lll.tpr  -b 800  -e 1000
>> actually my total time is 1000 ps.
>> the process was  not  done completely!
>> when I delete -e option it is done completely but the the result file is 0
>> byte,then i can not earn anything.
>> what is the problem?
>> thanks in advance for your comments
>> Mohsen


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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