[gmx-users] DSSP error

ahmet yıldırım ahmedo047 at gmail.com
Wed Nov 10 15:02:51 CET 2010


I installed in /usr/local/bin the DSSP program. And I set the environment
variable with a command such as “export DSSP=/usr/local/bin/dssp”.
ab at ubuntu:/Desktop/work# do_dssp -s run.tpr -f run.xtc
Selected 1: 'Protein'
There are 164 residues in your selected group
Opening library file /usr/share/gromacs/top/ss.map
Reading frame       0 time    0.000
Back Off! I just backed up dduigjCp to ./#dduigjCp.1#

Program do_dssp, VERSION 4.0.5
Source code file: ../../../../src/tools/do_dssp.c, line: 471

*Fatal error:*
Failed to execute command: /usr/local/bin/dssp -na dduigjCp ddDsSuzR >
/dev/null 2> /dev/null
"Jesus Not Only Saves, He Also Frequently Makes Backups." (Myron Bradshaw)

What should I do?

Thanks in advance

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