[gmx-users] g_hbond / hbmap.xpm file

Justin A. Lemkul jalemkul at vt.edu
Wed Nov 10 15:07:14 CET 2010

shahab shariati wrote:
> Dear Justin
> Thus, if there are 40 hydrogen bond. Numerical indice 5 on the y-axis of 
> .eps file is same to indice 35 in .ndx file. Is it true?

No.  Index 5 of the .ndx file corresponds to data line 35 of the .xpm file.  The 
output .eps file is numbered in accordance to the .ndx file.  The numbering is 
always the same.  The only difference that is somewhat non-intuitive is the line 
order in the .xpm file.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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