Subject: Re: [gmx-users] GFP chromophore topology help

[Justin A. Lemkul]

Gerrit Groenhof wrote:
> Can you perform a simulation of the chromophore alone? 
> Does that stay stable?
> 

In that regard, some of the information on the following page may be useful:

http://www.gromacs.org/Documentation/Terminology/Blowing_Up#Diagnosing_an_Unstable_System

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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