[gmx-users] bitinilated peptide

[Justin A. Lemkul]

Gloria Saracino wrote:
> Hi everybody,
> I would like to submit a biotinilated peptide to MD with 53a6 force field. Do 
> you know where I can look for the topology and parameters file? 
> 

I would start with a literature search, then the Users' Contribution section of 
the Gromacs site, then perhaps poke around Google.

If nothing turns up, then you've got a long road of parameterization ahead of you.

http://www.gromacs.org/Documentation/How-tos/Parameterization

-Justin

> thank you in advance
> 
> 
>       

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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