[gmx-users] disparity in RMSD calculation

Sunita Patel sunita at mailhost.tifr.res.in
Sat Nov 20 06:54:17 CET 2010

Dear Users,

I calculated RMSD for a trajectory with same reference structure using GROMACS
and VMD. I observed completely difference plots for the same data. Please see
the attached file. 

What could be the cause for this disparity? 

Thanks for any suggestion.

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