[gmx-users] A periodic boundary trajectory with lots of objects: how to get rid of artefacts?

[ms]

On 23/11/10 17:00, Mark Abraham wrote:
> If you want a movie, then there I seem to recall that there is a VMD
> option to generate bonds for each frame, and not to use those from the
> first frame. Ask their mailing list. Such bonds will not traverse the
> PBC, obviously.

Just for the record: It seems that typing "mol bondsrecalc all" at the 
VMD Tk console and refreshing the visualization works to "sanitize" a frame.

thanks!
m.


-- 
Massimo Sandal, Ph.D.
http://devicerandom.org