[gmx-users] RMSD and Resolution

Tsjerk Wassenaar tsjerkw at gmail.com
Thu Nov 25 09:18:30 CET 2010

Hi Ahmet,

I'm not sure whether it's been checked. It has been found that NMR
structures tend to yield larger deviations than crystal structures. If
you're going to try, due make sure to compensate for other potential
influences, such as the size and sphericity of the proteins.



2010/11/25 ahmet yıldırım <ahmedo047 at gmail.com>:
> Hi,
> Is there a relationship between RMSD value obtained from the calculation and
> Resolution value in PDB file?
> Thanks in advance
> --
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands

More information about the gromacs.org_gmx-users mailing list