[gmx-users] RMSD and Resolution

[Tsjerk Wassenaar]

Hi Ahmet,

I'm not sure whether it's been checked. It has been found that NMR
structures tend to yield larger deviations than crystal structures. If
you're going to try, due make sure to compensate for other potential
influences, such as the size and sphericity of the proteins.

Cheers,

Tsjerk

2010/11/25 ahmet yıldırım <ahmedo047 at gmail.com>:
> Hi,
>
> Is there a relationship between RMSD value obtained from the calculation and
> Resolution value in PDB file?
>
> Thanks in advance
>
> --
> Ahmet YILDIRIM
>
> --
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-- 
Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Molecular Dynamics Group
* Groningen Institute for Biomolecular Research and Biotechnology
* Zernike Institute for Advanced Materials
University of Groningen
The Netherlands