[gmx-users] perl script for g_hbond

leila karami karami.leila1 at gmail.com
Mon Nov 29 15:37:36 CET 2010

Dear Mark and gromacs users

thanks for your time and consideration.

you said by multiplying the existence functions for hbonds between
protein and water and the hbonds between water
and DNA, then using Justin's script, I can obtain percentage each
water medited hydrogen bond during trajectory.
and also you said I need to create a corresponding index file too.

I don't know where should I start for multiply two existence functions?

please explain about it more.

any help will highly appreciated.


Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group
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