[gmx-users] g_select / Input error or input inconsistency

leila karami karami.leila1 at gmail.com
Tue Nov 30 15:58:52 CET 2010


Dear Justin

I enclosed the group name  Protein-H and DNA-H in quotes ' ' and " ".

waterO = group SOL and name OW;
heavy1 = group 'Protein-H';
heavy2 = group 'DNA-H';
inter = waterO and within 0.3 of heavy1 and within 0.3 of heavy2;
inter;

waterO = group SOL and name OW;
heavy1 = group "Protein-H";
heavy2 = group "DNA-H";
inter = waterO and within 0.3 of heavy1 and within 0.3 of heavy2;
inter;

but in both of states again:

selection parser: syntax error
 heavy1 = group 'Protein-H''lection '

-------------------------------------------------------
Program g_select, VERSION 4.5.1
Source code file: trajana.c, line: 1310

Input error or input inconsistency:
selection(s) could not be parsed
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors



-- 

Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group
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