[gmx-users] output force
Петр Попов
magistrpetrus at gmail.com
Sat Oct 9 12:40:02 CEST 2010
Hello dear gmx-users!
When calculated forces in gromacs to produce pmf, we have the net force in
output. For example:
...
#
# Giving Russians Opium May Alter Current Situation
#
@ title "Pull force"
@ xaxis label "Time (ps)"
@ yaxis label "Force (kJ/mol/nm)"
@TYPE xy
0.000000 1017490.761270
0.002000 -253098.034916
0.004000 -43856.400160
0.006000 48980.619113
0.008000 52103.053067
0.010000 33788.090031
0.012000 19096.388350
0.014000 14094.738810
0.016000 14027.621966
0.018000 15162.993741
0.020000 14136.978177
... etc.
What sould I do to get the net force of protein-solvent interactions or
protein-protein interactions or solvent-solvent interactions instead and get
output .xvg file in the form like this:
time Force(type1) Force(type2) Force(type3)
t1 f1 f1 f1
t2 f2 f2 f2
t3 f3 f3 f3
... ... ... ...
etc.
Thank you for attention and I hope you will help me!
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