[gmx-users] Reg: Installing gromacs in cygwin

[Justin A. Lemkul]

vinothkumar mohanakrishnan wrote:
> Its not clear to me what you are asking. if iam right the above message 
> is the configure command that i used during installation of gromacs.
>  

The error message you posted from make is incomplete.  There should be lines 
immediately above the "collect2: Id returned 1 exit status" line that indicate 
the actual error message.  Please post that information.

-Justin

> Regards
> Vinoth
> 
> On Mon, Oct 11, 2010 at 12:03 PM, Mark Abraham <mark.abraham at anu.edu.au 
> <mailto:mark.abraham at anu.edu.au>> wrote:
> 
> 
> 
>     ----- Original Message -----
>     From: vinothkumar mohanakrishnan <kmvinoth at gmail.com
>     <mailto:kmvinoth at gmail.com>>
>     Date: Monday, October 11, 2010 17:12
>     Subject: Re: [gmx-users] Reg: Installing gromacs in cygwin
>     To: Discussion list for GROMACS users <gmx-users at gromacs.org
>     <mailto:gmx-users at gromacs.org>>
> 
>      > Hi mark
>      >  
>      > I have installed cygwin 1.7.7(the latest version) and i want to
>     install only gromacs 4.0.5 (for scientific continuity).any help is
>     highly appreciated.
> 
>     OK, so like I asked last time, what's above the message you quoted?
> 
>     Mark
> 
>      >  
>      > Regards
>      > Vinoth
>      >
>      > On Mon, Oct 11, 2010 at 11:20 AM, Mark Abraham
>     <mark.abraham at anu.edu.au> wrote:
> 
>          >
>          >
>          > ----- Original Message -----
>          > From: vinothkumar mohanakrishnan <kmvinoth at gmail.com>
>          > Date: Monday, October 11, 2010 16:29
>          > Subject: [gmx-users] Reg: Installing gromacs in cygwin
>          > To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>          >
>          > > Hi
>          > >  
>          > > I am installing gromacs-4.0.5
>          >
>          > That version's a few years old, and unless you need
>         scientific continuity, you should install the latest version.
>          >
>          >
>          > > in windows using cygwin and i followed th procedure
>         described in the link
>         http://lists.gromacs.org/pipermail/gmx-users/2009-September/044792.html.
>         there is no problem with fftw-3.2.2 installation. while
>         insatlling gromacs at first i gave the command (as said in the
>         link above)
>          > >  
>          > > ./configure --prefix=/cygdrive/c/Packages/Gromacs
>         --enable-shared
>          > >                  LDFLAGS='-L/cygdrive/c/Packages/fftw/lib/'
>          > >                 
>         CPPFLAGS='-I/cygdrive/c/Packages/fftw/include/'
>          > >  
>          > > and then i gave the command *make* and i am getting the
>         error message as one given below. any help is highly appreciated.
>          > >  
>          > > collect2: Id returned 1 exit status
>          > > make[3]: *** [grompp.exe] Error 1
>          > > make[3]: Leaving directory
>         '/cygdrive/c/Packages/gromacs-4.0.5/src/kernel'
>          > > make[2]: *** [all-directory] Error 1
>          > > make[2]: Leaving directory
>         '/cygdrive/c/Packages/gromacs-4.0.5/src'
>          > > make[1]: *** [all] Error 2
>          > > make[1]: Leaving directory
>         '/cygdrive/c/Packages/gromacs-4.0.5/src'
>          > > make: *** [all-recursive] Error 1
>          >
>          > What's above that? Is this a recent cygwin installation?
>          >
>          > Mark
>          >
>          > --
>          > gmx-users mailing list    gmx-users at gromacs.org
>          > http://lists.gromacs.org/mailman/listinfo/gmx-users
>          > Please search the archive at
>         http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>          > Please don't post (un)subscribe requests to the list. Use the
>          > www interface or send it to gmx-users-request at gromacs.org.
>          > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
>      >
>      > --
>      > gmx-users mailing list    gmx-users at gromacs.org
>     <mailto:gmx-users at gromacs.org>
>      > http://lists.gromacs.org/mailman/listinfo/gmx-users
>      > Please search the archive at
>      > http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>      > Please don't post (un)subscribe requests to the list. Use the
>      > www interface or send it to gmx-users-request at gromacs.org
>     <mailto:gmx-users-request at gromacs.org>.
>      > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
>     --
>     gmx-users mailing list    gmx-users at gromacs.org
>     <mailto:gmx-users at gromacs.org>
>     http://lists.gromacs.org/mailman/listinfo/gmx-users
>     Please search the archive at
>     http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
>     Please don't post (un)subscribe requests to the list. Use the
>     www interface or send it to gmx-users-request at gromacs.org
>     <mailto:gmx-users-request at gromacs.org>.
>     Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================