[gmx-users] Gromacs installation problem @ RHEL5.5 server

Sathish sathisbioinfo at gmail.com
Wed Oct 13 07:55:59 CEST 2010

Dear Mark,
      Thanks for your reply. In my server gromacs installed at
"local/gromacs". I have checked out point 8 as you mentioned.
It was working with this "source /local/gromacs/bin/GMXRC" command.
and also tried , entered  "local/gromacs/bin" path and calling to GMXRC but
it shows error

[root at xxx bin]# GMXRC
/local/gromacs/bin/GMXRC: line 35: return: can only `return' from a function
sourced script
/local/gromacs/bin/GMXRC: line 44: CSH:: command not found
/local/gromacs/bin/GMXRC.csh: line 8: syntax error near unexpected token
/local/gromacs/bin/GMXRC.csh: line 8: `if (! $?LD_LIBRARY_PATH) setenv
Y_PATH ""'
[root at xxx bin]#

kindly help me to fix this problem and  luck is not working.

On Wed, Oct 13, 2010 at 12:57 PM, Mark Abraham <mark.abraham at anu.edu.au>wrote:

> ----- Original Message -----
> From: Sathish <sathisbioinfo at gmail.com>
> Date: Wednesday, October 13, 2010 14:31
> Subject: [gmx-users] Gromacs installation problem @ RHEL5.5 server
> To: gmx-users at gromacs.org
> > Dear all,
> > I have compiled and installed gromacs 4.5.1 on RHEL5.5 server. I have
> also installed openmpi-1.2.8, fftw-3.2.2 and gsl-1.11. After gromacs 4.5.1
> installation did make tests and make links. Finally got message "GROMACS is
> installed under /root/software" and  "binary executable installed
> /usr/local/bin". Utill this am not getting any errors.
> > Then i was tried to calling "luck" but get "command not found".I have
> searched the forum it says binary executable not in your path.
> > Am installing first time and need to know PATH is right which i given?
> Could anybody help me to solve this problem?
> > Advance thanks..
> Check out point 8 of
> http://www.gromacs.org/Downloads/Installation_Instructions
> Mark
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N. Sathishkumar,
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