[gmx-users] analysis

[Justin A. Lemkul]

mohsen ramezanpour wrote:
> Dear Gromacs users
> 
> I am searching for a good text for underestanding analysis tools.
> Of course I had read the user manual (chapter 8),But I think I need more 
> about them.for example I want a mathematical description
> and an easy explanation of analysis tool's results from a MD trajectory.
> Please let me know if you know a good reference.

This is a bit of a broad request, one that is not easily satisfied.  For more 
complex algorithms, the manual cites the relevant literature.  For more simple 
tasks, even Wikipedia usually has a reasonable answer.

Other than that, start looking for molecular modeling text books and prepare for 
a long time reading.

-Justin

> thanks in advance
> Best
> Mohsen
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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