[gmx-users] -pbc nojump

leila karami karami.leila1 at gmail.com
Wed Oct 20 12:55:02 CEST 2010

Dear Mark

my mean of [when I used trjconv -pbc nojump, I made one group (protein
and dna) in index file and I selected that as centering group.] is
the problem (nonentity of water molecules in interface of protein and
dna) was not solved.

what is your mean of [You might need two passes with trjconv]?
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