[gmx-users] yes/no

Justin A. Lemkul jalemkul at vt.edu
Sat Oct 30 16:34:07 CEST 2010

shahab shariati wrote:
> Hi gromacs users
> In gromacs manual, in appendix section, for every tool, in Files 
> section, there are input and output files needed for analysis. but in 
> Other options section, there are some things that I don't understand.
> Is third column of Other opthions default values?


> In third column of Other opthions, somewhen, yes or no is seen. What 
> does yes mean? What does no mean?

Yes means the option is applied, no means it is not.  It is a simple boolean 
condition.  For instance, with editconf, using "editconf -c" means the solute is 
centered, "editconf -noc" means it is not.


> any help will highly appreciated.


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


More information about the gromacs.org_gmx-users mailing list