[gmx-users] yes/no

[Justin A. Lemkul]

shahab shariati wrote:
> Hi gromacs users
>  
> In gromacs manual, in appendix section, for every tool, in Files 
> section, there are input and output files needed for analysis. but in 
> Other options section, there are some things that I don't understand.
>  
> Is third column of Other opthions default values?

Yes.

> In third column of Other opthions, somewhen, yes or no is seen. What 
> does yes mean? What does no mean?
>  

Yes means the option is applied, no means it is not.  It is a simple boolean 
condition.  For instance, with editconf, using "editconf -c" means the solute is 
centered, "editconf -noc" means it is not.

-Justin

> any help will highly appreciated.
>  
>  
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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