[gmx-users] restraining atoms to the plane at the bilayer center: pull code ?

Justin A. Lemkul jalemkul at vt.edu
Tue Sep 7 12:53:35 CEST 2010

maria goranovic wrote:
> I want to restrain certain atoms of my simulation to the plane 
> perpendicular to the bilayer normal, and at the bilayer center. Can 
> someone please provide a quick guide on how to do this? I read the 
> pull-code options, but restraining to a plane did not seem possible?

You can restrain atoms to a plane using position restraints.  See the manual for 
an example.


> -- 
> Maria G.
> Technical University of Denmark
> Copenhagen


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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