[gmx-users] PBS script

[manoj singh]

Justin,

Sorry if you felt insult.

I was having trouble running the gromacs at that point and therefore turned
to mailing in order to get some help. This topic seems to getting
unnecessary attention of many, which I certainly did not want.

I later found problem with mpdboot etc ( since this was compiled with
mpich2), which I hope to fix tomorrow.

So, please conclude this topic here.

Sincerely,

On Sun, Sep 12, 2010 at 10:33 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> manoj singh wrote:
>
>> Hi Chris,
>>
>>
>> Sorry if I have been rude is my response.
>>
>> I am new to the Gromacs-4.0. I just thought if some one can not give
>> positive response to the query, that person should not be responding as this
>> prohibits the further response to the topic.
>>
>>
> There are no such rules here.  Everyone is welcome to comment if they have
> insight or tips.  My response was also not what I would call "not positive,"
> rather an effort to genuinely help point you in the right direction.  In
> return, I received an insult.  In general, no one on this list will
> spoon-feed someone a procedure (especially when it seems that the individual
> has not done their homework) as it simply requires too much time for a
> simple mailing list.
> Let's turn this situation into a learning experience.
>
> Your first post suggested that you knew nothing about PBS or how to use
> Gromacs.  Based on your later posts, this is obviously not the case.  To get
> an effective response, you should do the following:
>
> 1. Post the script you're trying to use.
> 2. Post error message you're getting (if any), or otherwise describe (or
> better yet, cut-and-paste) relevant output from your queuing software that
> indicates the problem.
> 3. Understand that if someone suggests and additional resource, don't take
> it as dismissive.  You may simply be asking the wrong question, or perhaps
> asking the right question in the wrong place.  If I simply post the PBS
> script for use with my cluster, then some unsuspecting user will probably
> later on stumble across that post, take it out of context, and then blindly
> assume that it is the only correct way to use Gromacs, and we perpetuate a
> cycle of confusion.
>
> For a few more tips:
>
> http://www.gromacs.org/Support/Mailing_Lists#Mailing_List_Etiquette
>
> -Justin
>
>  Again, thanks for your mail and sorry for my any irresponsible post.
>>
>> Manoj
>>
>> On Sun, Sep 12, 2010 at 6:25 PM, <chris.neale at utoronto.ca <mailto:
>> chris.neale at utoronto.ca>> wrote:
>>
>>    Manoj,
>>
>>    to suggest that Justin is being lazy would be to ignore the
>>    hundreds, possibly thousands, of helpful posts that he has made on
>>    the gromacs mailing list to assist users like yourself free of charge.
>>
>>    In fact, Justin was probably helping you more than you have realized
>>    by pointing out that you can access some of this information in
>>    places other than the gromacs mailing list, and yes, google is one
>>    of those places.
>>
>>    Chris.
>>
>>    -- original message --
>>
>>    Thanks for reminding me the existence of Google.
>>    It must be hard to copy and paste few lines of the PBS script than
>>    advertising the Google.
>>
>>    On Sun, Sep 12, 2010 at 5:23 PM, Justin A. Lemkul <jalemkul at
>>    vt.edu <http://vt.edu>> wrote:
>>
>>
>>
>>        manoj singh wrote:
>>
>>            Thanks for the reply!
>>
>>            I will be very thankful if you can send me whatever you have.
>>
>>            I will change that according to my system.
>>
>>
>>        If you know enough to make changes, then you probably know
>>        enough to get up
>>        and running.  A Google search for "example PBS script" turns up
>>        nearly 4
>>        million results, the first of which contains much of the
>>        necessary basic
>>        information.
>>
>>        -Justin
>>
>>
>>
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>>
>>
>>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
>
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