[gmx-users] The solvent group Water is not continuous

[ahmet yıldırım]

Dear Justin,

I have Fatal Errror:The solvent group Water is not continuous. I look at
gmx-users mailing list search. I also have the same problem.
You said:(
http://lists.gromacs.org/pipermail/gmx-users/2010-January/048344.html)

It is exactly what I said; you've proven it. You have solvent, ligand, then
solvent. To use genion (as the program prints out at the prompt) you must have
a *continuous* group of solvent in order to embed ions. If you re-arrange the
coordinate file and [molecules] section of the topology, you can achieve this.


How can I do the re-arrange you said? Can you explain a little bit?

Thanks




-- 
Ahmet YILDIRIM
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20110401/e7a61627/attachment.html>