[gmx-users] The solvent group Water is not continuous

ahmet yıldırım ahmedo047 at gmail.com
Fri Apr 1 13:26:09 CEST 2011

Dear Justin,

I have Fatal Errror:The solvent group Water is not continuous. I look at
gmx-users mailing list search. I also have the same problem.
You said:(

It is exactly what I said; you've proven it. You have solvent, ligand, then
solvent. To use genion (as the program prints out at the prompt) you must have
a *continuous* group of solvent in order to embed ions. If you re-arrange the
coordinate file and [molecules] section of the topology, you can achieve this.

How can I do the re-arrange you said? Can you explain a little bit?


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