[gmx-users] not enough space

mohsen ramezanpour ramezanpour.mohsen at gmail.com
Wed Apr 6 14:29:21 CEST 2011

Dear All
I used mdrun for generating NVT

It crashed and massage was:

Trying to get md5sum: nvt-1.trr: Stale NFS file handle

Trying to get md5sum: nvt-1.edr: Stale NFS file handle

Program mdrun, VERSION 4.5.3-dev-20110310-a52f8-dirty
Source code file: /home/mohsen/src/gromacs/src/gromacs/gmxlib/checkpoint.c,
line: 1287

File input/output error:
Cannot fsync 'nvt-1.trr'; maybe you are out of disk space or quota?
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors

But I have enough space on my cluster!
it is excellent because I run 5 program with the same nvt.mdp file and all
of them gave above error.
Of course 3 of them ended succesfully although they gave the same error too.
Is the problem from my mdp file?

Thanks in advance
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