[gmx-users] Regarding missing files in gromos53a6.ff

[Justin A. Lemkul]

Hirdesh Kumar wrote:
> Dear Gromacs Users,
> I am new to Gromacs and I am trying to follow the tutorials. For 
> starting I am following the *KALP15 in DPPC* 
> tutorial(http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/02_topology.html). 
> But I am unable to locate following files in the Gromacs folder ..
> 
> aminoacids.rtp
> aminoacids.hdb
> aminoacids.c.tdb
> aminoacids.n.tdb
> aminoacids.r2b
> aminoacids.vsd
> ff_dum.itp
> ffnonbonded.itp
> ffbonded.itp
> forcefield.itp 
> ions.itp
> 
> spc.itp
> watermodels.dat
> 
> 
> Please suggest me where can I find the following files...
> 

The tutorial assumes you are using a Gromacs version in the 4.5.x series.  If 
you are not, the filenames will be completely different.  If you are using a 
suitable (new) version, the files are located in $GMXLIB/gromos53a6.ff.

-Justin

> Thanks and Regards,
> Hirdesh
>  
> 

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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