[gmx-users] Dangling bond error for dna

[Justin A. Lemkul]

majid hasan wrote:
> Dear All,
> 
> I created .pdb file for dna using gabedit. But when I try to create the 
> topology file I get this error: Fatal error:
> There is a dangling bond at at least one of the terminal ends and the 
> force field does not provide terminal entries or files. Edit a .n.tdb 
> and/or .c.tdb file.
> 
> Output of pdb2gmx, and my input pdb files are attached. Could anyone 
> please suggest why this is happening?
> 

Nothing is attached.

-Justin

> Thanks,
> Majid
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================