[gmx-users] the gmx-4.5.4 can not be compiled but the gmx-4.5.3 can

英雄不再寂寞 xiaowu759 at qq.com
Mon Apr 11 04:32:12 CEST 2011

Dear gmxers,
   I have had tried to install gmx-4.5.4 by compiling the source code. The first step ./configure finished without any error, but the second step running make reported some errors as follows
 /usr/lib64/gcc/x86_64-suse-linux/4.4/../../../../x86_64-suse-linux/bin/ld: /usr/local/lib/libfftw3f.a(tensor.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
/usr/local/lib/libfftw3f.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[3]: *** [libmd.la] Error 1
make[3]: Leaving directory `/root/Download/gromacs-4.5.4/src/mdlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/root/Download/gromacs-4.5.4/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/root/Download/gromacs-4.5.4/src'
make: *** [all-recursive] Error 1
 Note that I can install successfully gmx-4.5.3 using the very same procedure. How to deal with this problem? Please give me some hints. Thanks a lot.
 Yours sincerely,
 Chaofu Wu, Dr.
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