[gmx-users] Installation error

[pawan raghav]

I have already posted this error report on 6 Dec 2010 but still have not
getting any solution. So I am thankful if any one can rectify the solution
of installation problem i.e. While installing gromacs-4.5.3 I got an error
on executing make command. I am installing this gromacs version on cygwin.
The error written below, please tell me solution of this error.

Creating library file: .libs/libgmx.dll.a

.libs/checkpoint.o:checkpoint.c:(.text+0xcd): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x13c): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x236): undefined reference to
`_xdr_double'

.libs/checkpoint.o:checkpoint.c:(.text+0x256): undefined reference to
`_xdr_vector'

.libs/checkpoint.o:checkpoint.c:(.text+0x3f0): undefined reference to
`_xdr_float'

.libs/checkpoint.o:checkpoint.c:(.text+0x408): undefined reference to
`_xdr_vector'

.libs/checkpoint.o:checkpoint.c:(.text+0x64e): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0xfad): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0xff0): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x10a3): undefined reference to
`_xdr_double'

.libs/checkpoint.o:checkpoint.c:(.text+0x10bb): undefined reference to
`_xdr_vector'

.libs/checkpoint.o:checkpoint.c:(.text+0x127d): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x12c0): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x1372): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x138a): undefined reference to
`_xdr_vector'

.libs/checkpoint.o:checkpoint.c:(.text+0x1fb9): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x24cf): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x256a): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x2606): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x2642): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x26d4): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x2755): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x2791): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x27de): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x283a): undefined reference to
`_xdr_u_char'

.libs/checkpoint.o:checkpoint.c:(.text+0x287a): undefined reference to
`_xdr_u_char'

.libs/checkpoint.o:checkpoint.c:(.text+0x28ba): undefined reference to
`_xdr_u_char'

.libs/checkpoint.o:checkpoint.c:(.text+0x28fa): undefined reference to
`_xdr_u_char'

.libs/checkpoint.o:checkpoint.c:(.text+0x293a): undefined reference to
`_xdr_u_char'

.libs/checkpoint.o:checkpoint.c:(.text+0x297a): more undefined references to
`_xdr_u_char' follow

.libs/checkpoint.o:checkpoint.c:(.text+0x2f00): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x2f8e): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x2ffc): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x3070): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x30e4): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x3158): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x31cc): more undefined references to
`_xdr_string' follow

.libs/checkpoint.o:checkpoint.c:(.text+0x3236): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x328f): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x32d3): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x334a): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x3412): undefined reference to
`_xdr_double'

.libs/checkpoint.o:checkpoint.c:(.text+0x3457): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x34b1): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x3501): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x3551): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x358e): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x35d2): more undefined references to
`_xdr_int' follow

.libs/checkpoint.o:checkpoint.c:(.text+0x392f): undefined reference to
`_xdr_string'

.libs/checkpoint.o:checkpoint.c:(.text+0x3a31): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x3a75): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x4cb4): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x5216): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x6c90): undefined reference to
`_xdr_int'

.libs/checkpoint.o:checkpoint.c:(.text+0x76ca): more undefined references to
`_xdr_int' follow

.libs/enxio.o:enxio.c:(.text+0xc72): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xc91): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xcc3): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xcf9): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xd18): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xd40): more undefined references to
`_xdr_string' follow

.libs/enxio.o:enxio.c:(.text+0xdba): undefined reference to `_xdr_int'

.libs/enxio.o:enxio.c:(.text+0xdd7): undefined reference to `_xdr_int'

.libs/enxio.o:enxio.c:(.text+0xe62): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xe81): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xeb3): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xf43): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xf62): undefined reference to `_xdr_string'

.libs/enxio.o:enxio.c:(.text+0xfe4): more undefined references to
`_xdr_string' follow

.libs/gmxfio.o:gmxfio.c:(.text+0x728): undefined reference to
`_xdrstdio_create'

.libs/gmxfio.o:gmxfio.c:(.text+0xd39): undefined reference to
`_xdrstdio_create'

.libs/xdrd.o:xdrd.c:(.text+0x30): undefined reference to `_xdr_int'

.libs/xdrd.o:xdrd.c:(.text+0x40): undefined reference to `_xdr_int'

.libs/xdrd.o:xdrd.c:(.text+0x81): undefined reference to `_xdr_float'

.libs/xtcio.o:xtcio.c:(.text+0xb7): undefined reference to `_xdr_int'

.libs/xtcio.o:xtcio.c:(.text+0xd8): undefined reference to `_xdr_int'

.libs/xtcio.o:xtcio.c:(.text+0x13c): undefined reference to `_xdr_int'

.libs/xtcio.o:xtcio.c:(.text+0x18c): undefined reference to `_xdr_float'

.libs/xtcio.o:xtcio.c:(.text+0x23c): undefined reference to `_xdr_float'

.libs/xtcio.o:xtcio.c:(.text+0x257): undefined reference to `_xdr_float'

.libs/xtcio.o:xtcio.c:(.text+0x272): undefined reference to `_xdr_float'

.libs/xtcio.o:xtcio.c:(.text+0x28d): undefined reference to `_xdr_float'

.libs/xtcio.o:xtcio.c:(.text+0x2a8): more undefined references to
`_xdr_float' follow

.libs/libxdrf.o:libxdrf.c:(.text+0x51f): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x537): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x54f): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x575): undefined reference to `_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x58d): undefined reference to `_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x5a5): undefined reference to `_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x5bd): undefined reference to `_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x5d5): undefined reference to `_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x5ed): more undefined references to
`_xdr_float' follow

.libs/libxdrf.o:libxdrf.c:(.text+0xacd): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0xbfc): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x2159): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x2190): undefined reference to
`_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x247c): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x24b2): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x2505): undefined reference to
`_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x25b3): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x262e): undefined reference to
`_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x2642): undefined reference to
`_xdr_vector'

.libs/libxdrf.o:libxdrf.c:(.text+0x26a0): undefined reference to
`_xdr_float'

.libs/libxdrf.o:libxdrf.c:(.text+0x26b8): undefined reference to
`_xdr_vector'

.libs/libxdrf.o:libxdrf.c:(.text+0x2786): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x27a8): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x27c7): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x27e2): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x27fd): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x2a24): more undefined references to
`_xdr_int' follow

.libs/libxdrf.o:libxdrf.c:(.text+0x3803): undefined reference to
`_xdr_opaque'

.libs/libxdrf.o:libxdrf.c:(.text+0x3852): undefined reference to
`_xdr_opaque'

.libs/libxdrf.o:libxdrf.c:(.text+0x40bd): undefined reference to `_xdr_int'

.libs/libxdrf.o:libxdrf.c:(.text+0x437a): undefined reference to `_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x13d): undefined reference to
`_xdr_float'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x194): undefined reference to
`_xdr_double'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x1ce): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x267): undefined reference to
`_xdr_double'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x286): undefined reference to
`_xdr_vector'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x2d7): undefined reference to
`_xdr_u_char'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x325): undefined reference to
`_xdr_u_char'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x342): undefined reference to
`_xdr_u_char'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x35f): undefined reference to
`_xdr_u_char'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x37c): undefined reference to
`_xdr_u_char'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x399): more undefined references to
`_xdr_u_char' follow

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x4ef): undefined reference to
`_xdr_u_short'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x532): undefined reference to
`_xdr_u_char'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x57a): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x5ae): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x5e0): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x84d): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x88c): undefined reference to
`_xdr_string'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x90b): undefined reference to
`_xdr_float'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x92a): undefined reference to
`_xdr_vector'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x970): undefined reference to
`_xdr_double'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x9a6): undefined reference to
`_xdr_double'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x9c2): undefined reference to
`_xdr_float'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xa98): undefined reference to
`_xdr_u_short'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xab7): undefined reference to
`_xdr_u_char'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xad6): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xaed): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xb04): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xb23): undefined reference to
`_xdr_int'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xd30): undefined reference to
`_xdr_float'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xd53): undefined reference to
`_xdr_vector'

.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xd64): undefined reference to
`_xdr_double'

collect2: ld returned 1 exit status

make[4]: *** [libgmx.la] Error 1

make[4]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src/gmxlib'

make[3]: *** [all-recursive] Error 1

make[3]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src/gmxlib'

make[2]: *** [all-recursive] Error 1

make[2]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src'

make[1]: *** [all] Error 2

make[1]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src'

make: *** [all-recursive] Error 1


-- 
Pawan
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